Welcome to Metagenomics Workshop!

Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical steps of metagenome assembly and binning.

• Setting up your OpenStack instance
• The Tutorial Data Set
• FastQC Quality Control
• Assembly
  • Velvet Assembly
  • MEGAHIT Assembly
  • metaSPAdes Assembly
  • IDBA-UD Assembly
  • Ray Assembly
• Gene Prediction
• Assembly Evaluation
  • Read Mapping
  • MetaQUAST
• Binning
  • MaxBin Binning
  • MetaBAT Binning
• Classification
  • Kraken Taxonomic Sequence Classification System